rs46590048 SNP Detail

Summary

• ID
  rs46590048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135660839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTTGACGA CACTTTTGTC TACCTGGCAG
  GTTCCAGAGA GCTCAGAGAA CTTCTAGCAG CTCAGTTCTA CCCAGATAAA TACCTAACAG
  GTCTCTACCA GACCAAGAAG GCGGGGACTT GAGCCCTGAG CCTGTCAAGC CCTCTTTCAC
  Y
  GGAGGGAACA GGGATTATGG AGTGTGGGGA TGGGGTTTTT CCACTGGAGA AGATGTGAGG
  TGGCTTGTCA AGTGTTTGAC GGGGCAGGCT CTTCTTGGGC ACAGGTGGCT GGCAGGCTTA
  GAACCCAGGT GGTTCTTTTG ACCTGAAACA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145544265	ENSMUSSNP1949711	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss319992780	CHEV_1_137629678	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46590048					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135660839 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Csrp1	cysteine and glycine-rich protein 1			Intron
				Noncoding-Transcript-Variant
Rr419257	regulatory region 419257			within coordinates
Rr419258	regulatory region 419258			934 bp proximal