rs46590381 SNP Detail

Summary

• ID
  rs46590381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40506881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGTGGG ATTTAGGCTA
  ACAACACAAG CAGCTGGCTG AGAGAACTTT ACCCCTAAGG AATGGCTATA ACTAACTGGA
  ATAATTACGT TTTGTCCACT CTCCTTAATC TGGAATTGAG CCAGATAGAG GGAGTTGGGC
  ATGGAGCACA CATAGTAAGA CAAAGAAGTG AAGGCGGGCA GGAGGCTGAC AGGTCAGCAC
  Y
  AAGTAACAGA TTCCTGCTGC CTCTGCGGAG AGCGTGGAGG ACACTGACAT CTTTGCCCCT
  CTCTCTACCT TCCACACAAG ATGTCAGCCT TGGGGTGCCT GGCGCAGGCG CCTGGTATCT
  ACATTTTCCC TACATCCTCC CACAGGGGAT CTATTTGGGA GACAGCCTCA GCGGCCTGCC
  GTTTACTACT CAAAGAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61273384	NES16894436	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46590381					SNP	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273384	NES16894436	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40506881 () rs orientation: forward

Symbol	Name	Function Class
Ddo	D-aspartate oxidase	within coordinates
Rr214674	regulatory region 214674	1281 bp distal
Rr224698	regulatory region 224698	within coordinates
Tssr93026	transcription start site region 93026	832 bp downstream
Tssr93027	transcription start site region 93027	822 bp downstream