rs46591689 SNP Detail

Summary

• ID
  rs46591689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130631841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGACTAT AACATTGTTT
  CATCAAGATA CAACTGTGTA CCCAGTAATC CCAGCACTAT GAAGTTGGGA GCAGGAGGAC
  CAGGAGTTTA AGGTCATCCT CTGTTATACA GTGAGTCAAA GGCCAGCATT GATTCCTTGA
  CACTGTCTCA AAAACACAAA GCAAAACACA TTTCCTAAGG CAATGTTCCC ACAGGTCTCC
  R
  TGCTTTCTTC CTTCAGCATA ACATTTTACT ATACCCCACA CCAGGCAAGC CCTCACTGTT
  ATGATGTCTC ACACTGATCA GACATTTCCT CTTGAGTGAG GCAAACTTTA AAATTTATTA
  AAACTGATGA CACATCTCCA AGGGATATCC TACAGCATTC TAGTTCCAAT TTGCTAAATC
  TGGAGCAGCG GTTCTCAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145474331	ENSMUSSNP3847004	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46591689					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130631841 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm29427	predicted gene 29427			Intron
Pfkfb2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr417945	regulatory region 417945			150 bp distal