rs46593584 SNP Detail

Summary

• ID
  rs46593584
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126154411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGTTTCCT AAAAGTCTTA CTCCCTACAG GTGGTAGAGA
  GGGAGAGGGA GGGGCTGGAA TTCAAAATTG AAGGGAGAAG TCCAAGAACT TGGGGCCTGC
  W
  GTGTAGGGAG TTCTGTCTTG TTTGTGCTGG AGATGAGACC CAGGGCCTTG CCCATACAAA
  GCATGCGCTC TACTCCTGAT CCCTGACAGC CACCCCAAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147407569	ENSMUSSNP150426	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46593584					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126154411 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14813	CpG island 14813	1472 bp proximal
Rr398487	regulatory region 398487	726 bp downstream
Rr398488	regulatory region 398488	1594 bp upstream
Rr599660	regulatory region 599660	within coordinates
Rr599661	regulatory region 599661	1217 bp proximal
Rr599662	regulatory region 599662	1576 bp proximal
Rr599663	regulatory region 599663	1718 bp proximal
Trappc3	trafficking protein particle complex 3	1787 bp upstream
Tssr38986	transcription start site region 38986	228 bp downstream
Tssr38987	transcription start site region 38987	1751 bp upstream
Tssr38988	transcription start site region 38988	1764 bp upstream