rs46593656 SNP Detail

Summary

• ID
  rs46593656
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:57812089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TATTTCAGCA AGTGCTTTAA ACCTTAAGGT TTTACTTTTT
  TTCAAACCAA ATTACTTTGA GCAATCAAAG GTCTGAGTTT GATTTGAAAC TCTCAATAAG
  R
  CGTTCAGCAG TCTGATTTCT CTTGCTACGC CGGGTCTAAC TCCTGAAAGA TAGCATTGTT
  TCCTTTGGGT TTTCAGACCG TTGCCCTTTC TGGGCAGGGC C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss149130686	ENSMUSSNP6043314	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46593656					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57812089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi274	CpG island 274	1256 bp proximal
Rr411358	regulatory region 411358	945 bp proximal
Rr411359	regulatory region 411359	1610 bp proximal
Rr411360	regulatory region 411360	1896 bp proximal
Rr411361	regulatory region 411361	1942 bp proximal
Spats2l	spermatogenesis associated, serine-rich 2-like	1232 bp upstream
Tssr6747	transcription start site region 6747	1818 bp upstream
Tssr6748	transcription start site region 6748	1912 bp upstream