rs46594287 SNP Detail

Summary

• ID
  rs46594287
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46137879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACTGCTCT AGCAGAAGAC CCGGGATTCA GCACCCCCAC
  CCCGCTCCCG CGCACTCTCC TCCTTGCTCA CAGAGAGTCT GAAACTCCAG TTCCAGGATG
  R
  TGTACAGACT TACAAATACA TAAAATATTG CTTTAAGTCT GTGAAGAGTT TTAAGCATAG
  TAAATAAGTT TGACTAGACT TGCTCTCAGA GTATAGCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146261772	ENSMUSSNP554198	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321104090	CHEV_4_46150751	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46594287					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46137879 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14246	CpG island 14246	284 bp proximal
Ncbp1	nuclear cap binding protein subunit 1	853 bp upstream
Rr591548	regulatory region 591548	within coordinates
Rr591549	regulatory region 591549	549 bp proximal
Rr591550	regulatory region 591550	745 bp proximal
Rr591551	regulatory region 591551	825 bp proximal
Tssr37109	transcription start site region 37109	605 bp upstream
Tssr37110	transcription start site region 37110	650 bp upstream
Tssr37111	transcription start site region 37111	698 bp upstream
Tssr37112	transcription start site region 37112	833 bp upstream
Tssr37113	transcription start site region 37113	942 bp upstream
Tssr41557	transcription start site region 41557	477 bp downstream
Tssr41558	transcription start site region 41558	519 bp downstream
Tssr41559	transcription start site region 41559	788 bp downstream
Tstd2	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	within coordinates