rs46595298 SNP Detail

Summary

• ID
  rs46595298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43878489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAATAATC AAAAGTATAA TACTGTAATA CAACAGATAA
  ATTTCAACCT AATTTCCCTA AAGTTTCTAA ACAGCTTTAG ATGAATGATC GGAAGATGGG
  Y
  TTGAGGAGAA AACCTTTTTG CCGGGGAGAT ACAACACACA TGTTAATGCA CCCCAGAAAG
  GGAACCCAGA CTGATCCATA GAACAATTTC CCCAGTGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62747687	NES17340476	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	T	T	C	T	C		T	C	T	T		T
ss145670507	ENSMUSSNP5956584	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss325395751	CHEV_17_43704547	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46595298					SNP	C	C	C	T	C	C	T	T	C	T	C	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62747687	NES17340476	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43878489 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	725 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	520 bp upstream
Rr527121	regulatory region 527121	181 bp proximal
Rr527122	regulatory region 527122	682 bp proximal
Tssr144685	transcription start site region 144685	389 bp upstream
Tssr144686	transcription start site region 144686	498 bp upstream
Tssr144687	transcription start site region 144687	554 bp upstream
Tssr144688	transcription start site region 144688	692 bp upstream
Tssr144689	transcription start site region 144689	849 bp upstream
Tssr144690	transcription start site region 144690	884 bp upstream
Tssr144691	transcription start site region 144691	904 bp upstream
Tssr144692	transcription start site region 144692	960 bp upstream
Tssr144693	transcription start site region 144693	1008 bp upstream
Tssr144694	transcription start site region 144694	1043 bp upstream
Tssr144695	transcription start site region 144695	1091 bp upstream
Tssr144696	transcription start site region 144696	1108 bp upstream
Tssr144697	transcription start site region 144697	1798 bp upstream
Tssr148130	transcription start site region 148130	906 bp downstream