rs46595608 SNP Detail

Summary

• ID
  rs46595608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:127703582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATATTA GAATAATTTA
  AGTACTCAAA ACAGAATAGT TTGTTTGGGC AAGTGTAGTC CTTGGGAAGG ATACATTTAA
  TTGTGTAGGG TTCTTTGTTT CAAATGGTAT GAATTGAGTC TTGCTTTGAA GTAATACTTT
  AATTTCTCTT TATAATTTGC CTTTTATTAG AATTTTTATA GTGTTATTCT GAAAGGCACA
  Y
  GTAGGACTAG GCCATGTAAG GACTTAATGT TCTTTGTGGA TAGTTTGTGG AGTTTAGGCT
  CCCAATTGCT AAGGAAACAG TTTTAGAAAA GTTTCTTACA TTTTTTGCTT TTGAAATGGC
  AGAAATGTTA TAGTTTAGAT TAATTCCTGC TTTAAATTCA GTTGATCTTA AGTCTAACCT
  GGTTTATCAA ATTTGCAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60798942	NES16471892	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46595608					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60798942	NES16471892	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127703582 () rs orientation: forward

Symbol	Name	Function Class
2900009J06Rik	RIKEN cDNA 2900009J06 gene	1791 bp upstream
Ccnt2	cyclin T2	Intron
Cpgi690	CpG island 690	908 bp distal
Rr396250	regulatory region 396250	1703 bp downstream
Rr417683	regulatory region 417683	1991 bp distal
Rr417684	regulatory region 417684	1671 bp distal
Rr417685	regulatory region 417685	798 bp distal
Tssr8489	transcription start site region 8489	1607 bp downstream
Tssr8490	transcription start site region 8490	1573 bp downstream