rs46596350 SNP Detail

Summary

• ID
  rs46596350
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82602954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGAGTGG CTTATACAAC
  GGGGGCTTGT GGTATGTGAG CACAGGCTGG GCAGCTGTGA GAGTCCAGAG TGGGGTGGCC
  CTGGGGACAC TTCCAGGCCA GCTATCCCCT GCACCCCACC AGCTGATTTC GAGCGTGGCA
  GAGGGAAGGA AAGGGGCGAG TGGGCTGGGC AATGGCCCCA ACAGGAAACG GGGACTTAGG
  A
  GAACACGCTG GAGATATGTG TGGCCGCCAA ATGTCACCAT CTCTCCTCAG TGGCTCCCCA
  GAGCTGGTGC TTTTAAGAAC CCTGTTTCCT CTCAGAGCCC AGGGAGAGTC CAAGGACATG
  GCGCATCTGG AAGTGGGACT GCAGGAGTTC TCTGGTGGCC TCGTGCTGTC CCTCTGGCCA
  CTTCTCATGG TGGGGTGGTC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147616961	ENSMUSSNP6077829	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46596350					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82602954 () rs orientation: forward

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	1631 bp proximal
Gm58829	predicted gene, 58829	within coordinates
Mbp	myelin basic protein	within coordinates
Rr541827	regulatory region 541827	694 bp distal
Tssr152152	transcription start site region 152152	704 bp downstream
Tssr152153	transcription start site region 152153	580 bp downstream
Tssr152154	transcription start site region 152154	557 bp downstream
Tssr152155	transcription start site region 152155	521 bp downstream
Tssr152156	transcription start site region 152156	452 bp downstream
Tssr152157	transcription start site region 152157	374 bp downstream
Tssr152158	transcription start site region 152158	337 bp downstream
Tssr152159	transcription start site region 152159	313 bp downstream
Tssr152160	transcription start site region 152160	267 bp downstream
Tssr152161	transcription start site region 152161	251 bp downstream
Tssr152162	transcription start site region 152162	230 bp downstream
Tssr152163	transcription start site region 152163	213 bp downstream
Tssr152164	transcription start site region 152164	168 bp downstream
Tssr152165	transcription start site region 152165	95 bp downstream
Tssr152166	transcription start site region 152166	59 bp downstream
Tssr152167	transcription start site region 152167	27 bp downstream
Tssr152168	transcription start site region 152168	within coordinates
Tssr152169	transcription start site region 152169	48 bp upstream
Tssr152170	transcription start site region 152170	129 bp upstream
Tssr152171	transcription start site region 152171	189 bp upstream
Tssr152172	transcription start site region 152172	296 bp upstream
Tssr152173	transcription start site region 152173	319 bp upstream
Tssr152174	transcription start site region 152174	337 bp upstream
Tssr152175	transcription start site region 152175	360 bp upstream
Tssr152176	transcription start site region 152176	569 bp upstream
Tssr152177	transcription start site region 152177	737 bp upstream
Tssr154083	transcription start site region 154083	599 bp upstream
Tssr154084	transcription start site region 154084	545 bp upstream
Tssr154085	transcription start site region 154085	288 bp upstream
Tssr154086	transcription start site region 154086	239 bp downstream
Tssr154087	transcription start site region 154087	454 bp downstream
Tssr154088	transcription start site region 154088	494 bp downstream
Tssr154089	transcription start site region 154089	605 bp downstream
Tssr154090	transcription start site region 154090	677 bp downstream