rs46597061 SNP Detail

Summary

• ID
  rs46597061
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53190432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GAATGACCCA ACCTAACTCA ATATCCAAAA ACGAATGAAG
  GGAGTTAAAA CGCTATCAAG AAAAGCATGG ACTTTATTCA GGGCCTGCCG TGGGTACTCA
  R
  ACTCCACATC TTCCGGGCGC CACCCCGCCC CCACTCACGT GGGACTCAGA GCGCTTCCCA
  GTCCCGAGGC CACAATCTTG CAAGTTAACT TTTATTAAAT G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss132133566	ENSMUSSNP946009	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46597061					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53190432 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2859	CpG island 2859	within coordinates
Hspa4	heat shock protein 4	within coordinates
Rr369205	regulatory region 369205	808 bp upstream
Rr446993	regulatory region 446993	within coordinates
Rr446994	regulatory region 446994	842 bp proximal
Tssr101379	transcription start site region 101379	250 bp upstream
Tssr101380	transcription start site region 101380	279 bp upstream
Tssr101381	transcription start site region 101381	1201 bp upstream
Tssr107908	transcription start site region 107908	572 bp downstream
Tssr107909	transcription start site region 107909	582 bp downstream
Tssr107910	transcription start site region 107910	594 bp downstream
Tssr107911	transcription start site region 107911	727 bp downstream
Tssr107912	transcription start site region 107912	768 bp downstream
Tssr107913	transcription start site region 107913	925 bp downstream
Tssr107914	transcription start site region 107914	1081 bp downstream