rs46598027 SNP Detail

Summary

• ID
  rs46598027
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55205760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAG GTCTTGCATG CAGTATTCTC
  S
  AAGGGACCTG ATTCAACCTT GCATT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss52723016	NES15567936	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G		C	G	G		G
ss139574345	ENSMUSSNP4665744	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G
ss324641230	CHEV_14_55587140	CHEVERUD	SCREENING_POP	f	SNP										G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs46598027					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52723016	NES15567936	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55205760 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	455 bp upstream
Myh6	myosin, heavy polypeptide 6, cardiac muscle, alpha	1376 bp upstream
Rr407057	regulatory region 407057	520 bp distal
Rr492378	regulatory region 492378	1709 bp distal
Rr492379	regulatory region 492379	1172 bp distal
Rr492380	regulatory region 492380	within coordinates
Rr492381	regulatory region 492381	1358 bp proximal
Tssr4420	transcription start site region 4420	1888 bp upstream
Tssr4421	transcription start site region 4421	1882 bp upstream
Tssr4422	transcription start site region 4422	1830 bp upstream
Tssr4423	transcription start site region 4423	1804 bp upstream
Tssr4424	transcription start site region 4424	1766 bp upstream
Tssr4425	transcription start site region 4425	1653 bp upstream
Tssr125718	transcription start site region 125718	369 bp upstream
Tssr125719	transcription start site region 125719	448 bp upstream
Tssr125720	transcription start site region 125720	478 bp upstream
Tssr125721	transcription start site region 125721	498 bp upstream
Tssr125722	transcription start site region 125722	923 bp upstream
Tssr125723	transcription start site region 125723	992 bp upstream
Tssr125724	transcription start site region 125724	1004 bp upstream
Tssr125725	transcription start site region 125725	1864 bp upstream
Tssr125726	transcription start site region 125726	1889 bp upstream
Tssr125727	transcription start site region 125727	1922 bp upstream
Tssr128742	transcription start site region 128742	1718 bp upstream
Tssr128743	transcription start site region 128743	1695 bp upstream
Tssr128744	transcription start site region 128744	1366 bp upstream
Tssr128745	transcription start site region 128745	1081 bp upstream
Tssr128746	transcription start site region 128746	328 bp upstream
Tssr128747	transcription start site region 128747	304 bp upstream
Tssr128748	transcription start site region 128748	260 bp upstream
Tssr128749	transcription start site region 128749	229 bp upstream
Tssr128750	transcription start site region 128750	207 bp upstream
Tssr128751	transcription start site region 128751	201 bp upstream
Tssr128752	transcription start site region 128752	142 bp upstream
Tssr128753	transcription start site region 128753	38 bp downstream
Tssr128754	transcription start site region 128754	117 bp downstream