rs46598289 SNP Detail

Summary

• ID
  rs46598289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67144190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCTGGAAGAA GCTGGCGGAG CCACTTCAGC CCAGATCGAG
  ATGAACAAGA AGAGAGAGGC TGAGTTCCAG AAAATGCGCA GGGACCTGGA GGAGGCCACG
  Y
  TGCAGCATGA AGCCACAGCA GCCGCTCTTC GGAAGAAGCA CGCGGACAGC GTGGCTGAGC
  TCGGGGAGCA GATCGACAAC CTGCAGCGGG TGAAGCAGAA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132326587	ENSMUSSNP5186250	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46598289					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67144190 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Rr449442	regulatory region 449442	434 bp proximal
Tssr3528	transcription start site region 3528	1369 bp upstream
Tssr3529	transcription start site region 3529	1425 bp upstream
Tssr102199	transcription start site region 102199	1629 bp downstream
Tssr102200	transcription start site region 102200	1478 bp downstream
Tssr102201	transcription start site region 102201	111 bp upstream
Tssr102202	transcription start site region 102202	633 bp upstream
Tssr102203	transcription start site region 102203	693 bp upstream
Tssr102204	transcription start site region 102204	1091 bp upstream
Tssr102205	transcription start site region 102205	1309 bp upstream
Tssr102206	transcription start site region 102206	1413 bp upstream
Tssr108532	transcription start site region 108532	1606 bp upstream
Tssr108533	transcription start site region 108533	1454 bp upstream
Tssr108534	transcription start site region 108534	760 bp upstream
Tssr108535	transcription start site region 108535	654 bp upstream
Tssr108536	transcription start site region 108536	680 bp downstream
Tssr108537	transcription start site region 108537	692 bp downstream
Tssr108538	transcription start site region 108538	1194 bp downstream
Tssr108539	transcription start site region 108539	1402 bp downstream
Tssr108540	transcription start site region 108540	1462 bp downstream