rs46598960 SNP Detail

Summary

• ID
  rs46598960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47261078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTATTGTC ATCAATGAAC TCGGTCCTTC CCATCACTTA
  TCTCTGGTCA AGTATTTCTC TTACCTCCAG GCCATCACTG TTTTGATACC ATTCTCATCC
  R
  TTCCTTTATA AGTACCGAAT CCTCTGTCCA TCATAACAGG CCTGCCATCT TGAAGACGAG
  ACTGTAGTTG AGACATTAAG CAAAAATACA TAGATTGTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148985300	ENSMUSSNP4562015	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss324335508	CHEV_13_47202970	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46598960					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47261078 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	within coordinates
Cpgi5551	CpG island 5551	742 bp distal
Dek	DEK proto-oncogene	1401 bp upstream
Rr479039	regulatory region 479039	1166 bp distal
Rr479040	regulatory region 479040	544 bp distal
Rr479041	regulatory region 479041	1147 bp proximal
Tssr119627	transcription start site region 119627	1191 bp downstream
Tssr119628	transcription start site region 119628	1172 bp downstream
Tssr122371	transcription start site region 122371	1980 bp upstream
Tssr122372	transcription start site region 122372	1900 bp upstream
Tssr122373	transcription start site region 122373	1855 bp upstream
Tssr122374	transcription start site region 122374	1727 bp upstream
Tssr122375	transcription start site region 122375	1492 bp upstream
Tssr122376	transcription start site region 122376	1474 bp upstream
Tssr122377	transcription start site region 122377	1431 bp upstream
Tssr122378	transcription start site region 122378	1396 bp upstream
Tssr122379	transcription start site region 122379	1381 bp upstream
Tssr122380	transcription start site region 122380	1369 bp upstream