rs46600062 SNP Detail

Summary

• ID
  rs46600062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58420286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGGAAAGAA TTGAGCCTGG GGGAACTTAA GTACATAATT
  TCAGCCCTTT AAAAAATGAA CAGTAGTGAC TGTGTCGATC AACACTATCA ACCACCTAGC
  Y
  TGATCCAAAA CGGAACTATG CAATGTCAAT GTCATCAGTT AATATGGCCA TATGCTTTGA
  GAGGGCAGCT CTCTCACCAT GTAGCCTGCA CTGGAACCAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52645697	NES15464205	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46600062					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52645697	NES15464205	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58420286 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5724	CpG island 5724	879 bp proximal
Gkap1	G kinase anchoring protein 1	within coordinates
Rr276751	regulatory region 276751	486 bp distal
Rr281488	regulatory region 281488	514 bp proximal
Rr388493	regulatory region 388493	1070 bp downstream
Tssr120072	transcription start site region 120072	1780 bp upstream
Tssr122822	transcription start site region 122822	547 bp upstream
Tssr122823	transcription start site region 122823	1624 bp downstream
Tssr122824	transcription start site region 122824	1649 bp downstream
Tssr122825	transcription start site region 122825	1791 bp downstream
Tssr122826	transcription start site region 122826	1868 bp downstream
Tssr122827	transcription start site region 122827	1895 bp downstream
Tssr122828	transcription start site region 122828	1989 bp downstream