rs46600505 SNP Detail

Summary

• ID
  rs46600505
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45864780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGTTCC TCAGACACAT
  GACTCTACAG ACTGCAGGCT GAGCTCTGCC CTGTGCCGTC CATCCTGGCC AGCCAGGACA
  CTGTCTGTGC TTCTCCTTGT GAGGGAACAG GCCAAGTTTC TAGAAATGAC TGACACTGTC
  CGGTCCGAGG CTTGAAGAAG CTCGCTCTTG GAAGAACGGG TATACAGAGC AGCAGAACCC
  R
  GGCAACAGCA GGGATATGCA GCGGAGACCT TAGAAGGTTC CAGGATAGCC CACATGCACA
  CACATGTTAT AGACACGTGT CTACACACGT CCCTGTGCAC ACACTGTCAC GGGAGATCAA
  GACGTGCCCT CAAGCCCTCA ATCTTCTTCC TCATGAACTA GGAAAGCAGC AAGAAGCTCC
  GGTTCCACTG CTACTCTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136420912	ENSMUSSNP5446173	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46600505					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45864780 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A830035O19Rik	RIKEN cDNA A830035O19 gene			619 bp upstream
Cpgi21698	CpG island 21698			951 bp proximal
Rr678012	regulatory region 678012			129 bp proximal
Rr678013	regulatory region 678013			1485 bp proximal
Sidt2	SID1 transmembrane family, member 2			Intron
				Noncoding-Transcript-Variant
Tssr84819	transcription start site region 84819			1845 bp upstream
Tssr89292	transcription start site region 89292			598 bp upstream
Tssr89293	transcription start site region 89293			191 bp downstream
Tssr89294	transcription start site region 89294			1484 bp downstream
Tssr89295	transcription start site region 89295			1688 bp downstream
Tssr89296	transcription start site region 89296			1714 bp downstream
Tssr89297	transcription start site region 89297			1744 bp downstream
Tssr89298	transcription start site region 89298			1771 bp downstream
Tssr89299	transcription start site region 89299			1797 bp downstream