rs46600812 SNP Detail

Summary

• ID
  rs46600812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11890292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCAAGGG CATGCTTGCA
  CTGTGATAAG CAGAAGGGGC CCACTCTGAG GATGGAGGCA TAGGACTCAC AGGGCCTTGT
  TCCTTCTCCT GTGGATAGAG GGGACCTTGT TTTGTTCATG GTTGCACCCT AGTAGTGTTT
  GCGAAAACAC TCCCAGAAAA CAAAAGTCAC ATGGCGAAAT TTAAATATAT GATCCTGCTC
  Y
  CAAGCTCACC ACGCTTTCAG GAAGGAGCAA CTTGGATTCT AACTTGAGGC TTCAGAACAG
  TACCTTACAC AGGGGAGATT TCCCCAGCCC ATTAGTGTGC TTGGCCCCCT CTCTCCATAC
  CCAGTCCATA GAATGAGGTG CTGTGTAACC CTTTTATGAC CTTGAGCTTC AAAATGATGT
  CACAATAAGC AGGGACTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60574281	NES16042073	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46600812					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60574281	NES16042073	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11890292 () rs orientation: forward

Symbol	Name	Function Class
Gm15875	predicted gene 15875	within coordinates
Rr659647	regulatory region 659647	939 bp proximal
Tex29	testis expressed 29	196 bp upstream
Tssr76253	transcription start site region 76253	209 bp upstream
Tssr76254	transcription start site region 76254	222 bp upstream
Tssr76255	transcription start site region 76255	276 bp upstream