rs46600859 SNP Detail

Summary

• ID
  rs46600859
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:48232438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGG TGAAATGTCA ACTCTCCCCA
  A
  TCTCAAGTGT TGACTCGTGG AAGAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136451661	ENSMUSSNP5222663	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46600859					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48232438 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nxpe2	neurexophilin and PC-esterase domain family, member 2			Intron
				mRNA-UTR
Nxpe4	neurexophilin and PC-esterase domain family, member 4			Intron
Tssr89370	transcription start site region 89370			1762 bp upstream