rs46600975 SNP Detail

Summary

• ID
  rs46600975
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52179868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAGAGGCA AAGGGCATGA
  GCTATTTCGA TCCTTCTTCG GCGGGTCAGG TAGCGGTTGA AGTGGAATTC TTTCTCCAGC
  TCCAGGGTCT GGTAGCGAGT GTAGGCCGTC CGGGCCCTTT TGCCTTCTGG GCCACCTATA
  TTGTCTGTAA CAAAAAAGTC AGCGGTTTAG CCACCAACTC CTCAGCACCT GGTTCCAAAA
  S
  TCAGCCAGGG TCCTGAGCTG CGGAGAAGGC TCAACAAGTT CTCCTTCCTC ACCCACCCTC
  CCCAAATTTC CTTCTCCCTT CCTTTCTGGC GAGAAAAACA ACCGGATTTG GACTCTGGGA
  ACAACCGACC CACCTGAGGC AGGAACTCTG GGTTTAAAGA CAGCTTGGCT TTCCCTCGCC
  CCCTAGTCTG CTCTTTAGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss133191029	ENSMUSSNP6931565	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46600975					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52179868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17423	CpG island 17423	349 bp proximal
Gm28308	predicted gene 28308	within coordinates
Hoxa3	homeobox A3	within coordinates
Hoxa5	homeobox A5	within coordinates
Hoxaas3	Hoxa cluster antisense RNA 3	within coordinates
Rr630365	regulatory region 630365	1649 bp proximal
Rr630366	regulatory region 630366	1689 bp proximal
Rr630367	regulatory region 630367	1766 bp proximal
Tssr56510	transcription start site region 56510	1644 bp downstream
Tssr60990	transcription start site region 60990	1915 bp upstream
Tssr60991	transcription start site region 60991	1351 bp downstream
Tssr60992	transcription start site region 60992	1363 bp downstream
Tssr60993	transcription start site region 60993	1427 bp downstream
Tssr60994	transcription start site region 60994	1499 bp downstream
Tssr60995	transcription start site region 60995	1527 bp downstream