rs46601499 SNP Detail

Summary

• ID
  rs46601499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95940559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGACCAAG CATGCGGTAA
  AAAGGTCAGA GACAAAAACA CACCAGGTCT GTGCCTTCAA CACTAGGTTT CTTCAGCCAT
  TTTTGTAGTT TTTAATCTAA CACTGGAGCA GGCGTCAGAG CCGTGCAGTC GCTTGAAAAC
  CTGCAGCACT TCGGTGTCTT CCAAAACATT GTGTATGCTT CCTGTCTTCA TGGGCGTTCA
  Y
  CTGCCCATTC TTGCTTGGTT GATGGTAGCA TACACAGTAA GGCCCTGAAT GCCAACTTTG
  ACACAGTGCC AGCTACACAG CAAGTGTCTG ACCTACGTTT AACTAAGCAC CATGGTTTAG
  AACTAACAAC AGTCTCTGTA AAAGACCTGG GAGTTGCTGA TCAGAGCCCC AATGGTGGGG
  ATTCTTGACA AGAGATAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144995950	ENSMUSSNP1548091	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46601499					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95940559 () rs orientation: forward

Symbol	Name	Function Class
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr277718	regulatory region 277718	42 bp proximal
Rr285448	regulatory region 285448	1442 bp proximal