rs46601637 SNP Detail

Summary

• ID
  rs46601637
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:98884690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGATCTTG GCAGATGGTC
  AGCAATTTGC TGCTAATGTA ATACAGCTCC TCTGTAGAAA TTGAGACTTT TAGTTTCGGG
  GAAGTTTTGT AGGACTTCTA CATTTGGAGT TTGCTACAGT TGAAGAAGAG CTTTAAGAGA
  CTGTATATTC CCCCCAAAAA AATCATTTTT GGAATTCCAG TAATATTGGC AGGAAATTAC
  K
  GAAATCCAAA TAAATAAGGC ATATGGTTAA TAATGTATCA GTGTTAGCTC CTTGGATGTG
  ACAAGCATAC TGTGGCAATG TGGGAAGCTG GGTGAGGAAT ACATTGAACT CAGTACTATC
  TGTGCATTGT TTTAAAATGG AAACATCAAA TTTTTCTGCA ATTAAAAAAT GTGTATAGGG
  CCAGAGAGAA GAAGCCAATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61685142	NES17645791	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46601637					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61685142	NES17645791	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:98884690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4974	CpG island 4974	1977 bp proximal
Rr403444	regulatory region 403444	1786 bp upstream
Rr470976	regulatory region 470976	1653 bp proximal
Rr470977	regulatory region 470977	1979 bp proximal