rs46602109 SNP Detail

Summary

• ID
  rs46602109
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48989826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAAGCAC TTGGAAGAGT
  GAGTCAGTCA CTACTGGAAC TGCACATCCG GCCACTGACA AAAGTGACCC CGTTATGCGA
  CTCCACCAAG CAGGTGAAAT CCGTCAAAGA GCTGGGTGGA CCACCTAGCT AACTTGTGAA
  ACGTGGACCC CCCTGAATCT AACATGGCAG AATCTCTCTT TATCATGTTC ACCCTGAGAC
  W
  CGGTGATGAC ATGAGCTGAG CTGACTTCCC ACCAAGCCAC GAATGACTTC ACTGGTCTCT
  GAGGCAGTGC AGGCACTTTG GGACTGTCCT TATTATTTCT GTCAATCACA TCAAAACATC
  CACTTAAGCT TTTAGTTTGC ACCCATTCCT TCAAATAAAG ATCTTTGGTA CCTCCCTCAC
  TGAGTTACCC ATCATGTCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62763764	NES17344113	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46602109					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62763764	NES17344113	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48989826 () rs orientation: forward

Symbol	Name	Function Class
Tssr148548	transcription start site region 148548	171 bp downstream