rs46602854 SNP Detail

Summary

• ID
  rs46602854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18914967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCT ATACAAAGAG TCTTGTGTCT
  R
  GATTCCTTGG TCCCGGCAAT GGGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148469630	ENSMUSSNP6376604	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46602854					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18914967 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18452	CpG island 18452	1111 bp distal
Cpgi18453	CpG island 18453	34 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Mir330	microRNA 330	423 bp upstream
Rr643019	regulatory region 643019	1704 bp distal
Rr643020	regulatory region 643020	within coordinates
Rr643021	regulatory region 643021	173 bp proximal
Tssr64797	transcription start site region 64797	120 bp upstream
Tssr64798	transcription start site region 64798	169 bp upstream
Tssr64799	transcription start site region 64799	251 bp upstream
Tssr64800	transcription start site region 64800	365 bp upstream