rs46603962 SNP Detail

Summary

• ID
  rs46603962
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:75700609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCATCATT GTTGTATATA
  TATGAGAGTC TATTTGAAGA ACACTGGAAA TAAGGCTTCA GGACCTTCAA AGACCCAGAG
  ACTCGAGAAA ACAATATAAA AAGGAGAAAT AAAATCCTCA CATACTTGTG GCTCACTTAG
  AAAATAACTT GAAATCTGTG CAATCGTCTC CCTTTGGGAA AGGATTTTGC ATCGTCTCCC
  M
  ATGCATCCTT GTCTGATAAA GCTAGGACCT ACCTTAAGAA GTGAGATCCG AAGCTGAGAT
  TTCCCTGGGC TTCACAAACC TCCGAATATT TCCATCTCTG AGATTCCATG GCACTGGCAT
  GGAGTTATGG CTGCCATACA AACTCATCTT GGCCCAGCAG AATGCCTGTA GTCTAATCCT
  CCTGTAGTGC TGGGCAGGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62907398	NES17398005	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46603962					SNP	A	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62907398	NES17398005	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:75700609 () rs orientation: forward

Symbol	Name	Function Class
Ltbp1	latent transforming growth factor beta binding protein 1	1102 bp downstream
Rr392951	regulatory region 392951	within coordinates
Rr531033	regulatory region 531033	1155 bp distal