rs46604446 SNP Detail

Summary

• ID
  rs46604446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4644480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTGTCA TCCAGTGCTA
  AAACCTAAAA GCAATCTAGA AACATGGCCT ACAACATTTA TACAAGTTGA TGGGAGGCCT
  GCAAAATTCA GTTATGTGCT TGCCATTACG TTGGCGGTTA TTCTTATGAC TGGTGTGCTG
  CTGCTGTTCC AAGTAATGCT GGTAACCATT TAACGAAGTT AAAAAAATGT TCAACATATC
  Y
  AAAGGCTCAA ATCCCGATAT TTCCTGAGTG TGAGGAGATA TGTACATTCA GGGGATTGGA
  TTTGTACTTT AAAAATGCAT TTTTACAAAA ACAGAGTAAC ACACACCTTT TGCCCAAACT
  TAGAGAATTT TTCAAGAATT TATTTTGGTC ATTTTATCCT ATACAAAGTG GACATTTTTT
  TATATAATCT TAGAAATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61339434	NES16949012	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46604446					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61339434	NES16949012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4644480 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4378	CpG island 4378	556 bp distal
Gm3625	predicted gene 3625	749 bp upstream
Gm48678	predicted gene, 48678	860 bp downstream
Itsn2	intersectin 2	within coordinates
Rr265387	regulatory region 265387	within coordinates
Tssr3767	transcription start site region 3767	648 bp downstream
Tssr112557	transcription start site region 112557	1832 bp downstream
Tssr112558	transcription start site region 112558	1807 bp downstream
Tssr112559	transcription start site region 112559	1644 bp downstream
Tssr112560	transcription start site region 112560	1535 bp downstream
Tssr112561	transcription start site region 112561	1393 bp downstream
Tssr112562	transcription start site region 112562	1333 bp downstream
Tssr112563	transcription start site region 112563	616 bp downstream
Tssr115637	transcription start site region 115637	1956 bp upstream
Tssr115638	transcription start site region 115638	785 bp upstream
Tssr115639	transcription start site region 115639	744 bp upstream
Tssr115640	transcription start site region 115640	727 bp upstream
Tssr115641	transcription start site region 115641	690 bp upstream
Tssr115642	transcription start site region 115642	668 bp upstream
Tssr115643	transcription start site region 115643	673 bp downstream