rs46605886 SNP Detail

Summary

• ID
  rs46605886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:12503844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACTCACA GACATCTGTT
  TGCCCTGCCT CCTAGGTGAT CTAAGGAAAG CACCACCACT CCCTGCCTGA ATAGTGACTG
  TTTGAAGAAA CAATTGATAC AAGCTATGAA CCTTTTCACA CTGTATTGGA TCTTGCTAAT
  GCTTCTTGTA ACAGCCTCTT AACAGATGTC TCCAGAGACC AATTACCACC TGCAGTGGTC
  Y
  TTACCTGTCC ACTCTTTGTA AAAAGGTGTC ATTACAAAAT GTTGCAGTGG AAAAAAAAAA
  TGTTGCAGTG GCTGCCCTAT ACTGAGTCCT ACAGGGTTAG AAAGGCACCT GAGAGATTTG
  CAAGAACCCC TAAGGAACAG GGTGGGGCAT CAGACAGGCT ACTGTGGCAA GGCATAGTTA
  CAAGGTTTCA TGGATAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60571596	NES16043241	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		C	T	C		T
ss322498735	CHEV_8_12453844	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs46605886					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60571596	NES16043241	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12503844 () rs orientation: forward

Symbol	Name	Function Class
Gm56835	predicted gene, 56835	within coordinates
Rr381713	regulatory region 381713	87 bp upstream