rs46606080 SNP Detail

Summary

• ID
  rs46606080
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26013809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCGGAGT ATCTCAGACC
  CTGGCTTTTT TGTCCATGCT TTGGTCATAA CTGACTGTTG GCCTAAACTT GACTTCAGCA
  CTGCTTCTAG AAAACACCTC CTACCACCCA AACCCCACCC CAACACACAC GAACTATCTC
  ATTCCCCTTC CAGCCCACCA GGTAAACAGA TATGGAACCT CAATCCTGGG CTTTCCCCAG
  A
  ACCCCACTTA GATCTAAATT TGGTCCCAGG TCCAAAAGCC CACCCCCACA CTGTCAGCCT
  ATTGAGGGCT GTCTGTCCGA GGGAAGCTGA GAAAAGGGGG CAAGATGCTG GAGACCCTCA
  ACCACGCATG GTTGAGTTAG AAGTCACTTG GGCATGGGGA CGTGGCAATG AGCAAGGGCA
  GTTATGCATA ATGCCACCTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146382765	ENSMUSSNP3996933	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs46606080					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26013809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11338	CpG island 11338	359 bp distal
Gm54107	predicted gene, 54107	440 bp downstream
Nacc2	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	986 bp upstream
Rr56450	regulatory region 56450	208 bp distal
Tssr23074	transcription start site region 23074	1032 bp upstream
Tssr23075	transcription start site region 23075	959 bp upstream