rs46606848 SNP Detail

Summary

• ID
  rs46606848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12195949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCCAGTG CTCTTAACCA
  CAAGCCATTT TTGCAGCCCT TTCTTTCATT GAACATTTAA CCCATTCAAT GTCTGCTGGA
  GAGAAATGAT TCAGCAGAGG AGATACCGAG CCTGTCTCTG CTCTTGTGGA CTGCTGTGTG
  TGCTTCAGCT TCCTTAATGG CTTTCAGATG GATGTTAGTG CTCACCCAGA AACATGGGAG
  R
  AATCCAAGGA GGACTAGAAG AAGGTTTTAG ATAAACTACT ATCTAAAGAG AAATGCCTCC
  CAGACCCCCA CCAAGATACC TACCTGTGTA GCCCTGGCTG TCCTGGAACT CTCAATGTAG
  ATCAGGCTGA CCTCGAACTC AGAGATCAGC CAGTATCTGC CTGCTGAGTG CTGAGACTAA
  ACCACCATAC CCGTCTTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61744053	NES17670745	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46606848					SNP	A	A	G	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61744053	NES17670745	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12195949 () rs orientation: forward

Symbol	Name	Function Class
Gm10336	predicted gene 10336	1654 bp downstream
Gm47322	predicted gene, 47322	1782 bp upstream
Mtr	5-methyltetrahydrofolate-homocysteine methyltransferase	1649 bp downstream