rs46607020 SNP Detail

Summary

• ID
  rs46607020
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:47236369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G ACTTGCATGG TGAGTAGGTG TGAGAGCTAA GGGGGAAAAG
  TTCGTTGGGG GAGGGAAGGG GATTTCAAAG TCCAGGAAGG AAGGTAGCTG TCAAAAATGG
  C
  TGAAGTGTTC ATCTTCCTGA GACAGGAGCT AGACTGAATG ATTCTTGAAG ACTCTGATAT
  CCAGGTTTCC CTGGCTGTAT GTATAGAGTT CATTTTATGT C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss134165127	ENSMUSSNP7032707	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs46607020					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:47236369 () rs orientation: forward

Symbol	Name	Function Class
Rr690989	regulatory region 690989	1046 bp distal
Rr690990	regulatory region 690990	within coordinates
Sash3	SAM and SH3 domain containing 3	within coordinates
Tssr160884	transcription start site region 160884	1010 bp downstream
Tssr160885	transcription start site region 160885	957 bp downstream
Tssr160886	transcription start site region 160886	932 bp downstream
Tssr163272	transcription start site region 163272	414 bp downstream