rs46607760 SNP Detail

Summary

• ID
  rs46607760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153628597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCA ATAAAAACTC GCAGGGGGAC
  R
  GAGAGAACGA ACAGAAAGAA CAGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60819906	NES16430909	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46607760					SNP	G	G	G	G	G	G	G	A	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60819906	NES16430909	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153628597 () rs orientation: forward

Symbol	Name	Function Class
Gm28512	predicted gene 28512	1087 bp downstream
Rnasel	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	within coordinates
Rr396400	regulatory region 396400	854 bp downstream
Tssr9483	transcription start site region 9483	975 bp downstream
Tssr9484	transcription start site region 9484	944 bp downstream
Tssr9485	transcription start site region 9485	851 bp downstream
Tssr9486	transcription start site region 9486	817 bp downstream
Tssr9487	transcription start site region 9487	49 bp downstream
Tssr9488	transcription start site region 9488	20 bp downstream
Tssr9489	transcription start site region 9489	1 bp upstream
Tssr9490	transcription start site region 9490	137 bp upstream