rs46609442 SNP Detail

Summary

• ID
  rs46609442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137177365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGAT CCTGACTGAG GTATCACTGA
  Y
  AAGAACAAAG AATGAAAAAA CTCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321701913	CHEV_5_137624388	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46609442					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137177365 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	742 bp downstream
Tssr1678	transcription start site region 1678	1967 bp downstream
Tssr49309	transcription start site region 49309	1261 bp upstream
Tssr49310	transcription start site region 49310	1621 bp upstream
Tssr49311	transcription start site region 49311	1635 bp upstream
Tssr53917	transcription start site region 53917	1811 bp upstream
Tssr53918	transcription start site region 53918	1751 bp upstream
Tssr53919	transcription start site region 53919	1121 bp downstream
Tssr53920	transcription start site region 53920	1137 bp downstream
Tssr53921	transcription start site region 53921	1292 bp downstream
Tssr53922	transcription start site region 53922	1333 bp downstream
Tssr53923	transcription start site region 53923	1374 bp downstream
Tssr53924	transcription start site region 53924	1388 bp downstream
Tssr53925	transcription start site region 53925	1426 bp downstream
Tssr53926	transcription start site region 53926	1457 bp downstream
Tssr53927	transcription start site region 53927	1606 bp downstream
Tssr53928	transcription start site region 53928	1624 bp downstream
Tssr53929	transcription start site region 53929	1661 bp downstream
Tssr53930	transcription start site region 53930	1726 bp downstream
Tssr53931	transcription start site region 53931	1751 bp downstream
Tssr53932	transcription start site region 53932	1767 bp downstream
Tssr53933	transcription start site region 53933	1805 bp downstream
Tssr53934	transcription start site region 53934	1837 bp downstream
Tssr53935	transcription start site region 53935	1888 bp downstream
Tssr53936	transcription start site region 53936	1909 bp downstream
Tssr53937	transcription start site region 53937	1999 bp downstream