rs46610098 SNP Detail

Summary

• ID
  rs46610098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98179167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCGGTCTGC TCGTGCGAGC CCGAGGGCGG GGCGCCGGGA
  GGAAGCCCGA CGAGCCACAC AAGCACACTT GAGGGTTCGT GCTGAGCAGC GGATGACTAA
  Y
  GCCTGCCAGA TTTCGGAAGG GAGAGAGGAG TTCTGAAAAA CAAACGTCCT CTAGATACTA
  AACATATCCA ACTCTCCCGC AAGCCTGGCC CGGCCTGTTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61199539	NES16709305	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs46610098					SNP	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61199539	NES16709305	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98179167 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	291 bp upstream
Cpgi16083	CpG island 16083	within coordinates
Gm42759	predicted gene 42759	within coordinates
Rr615103	regulatory region 615103	within coordinates
Rr615104	regulatory region 615104	1619 bp proximal
Tssr1554	transcription start site region 1554	346 bp upstream
Tssr47433	transcription start site region 47433	584 bp downstream
Tssr47434	transcription start site region 47434	572 bp downstream
Tssr47435	transcription start site region 47435	198 bp downstream
Tssr47436	transcription start site region 47436	19 bp downstream
Tssr47437	transcription start site region 47437	within coordinates
Tssr47438	transcription start site region 47438	1992 bp upstream
Tssr51988	transcription start site region 51988	692 bp upstream
Tssr51989	transcription start site region 51989	681 bp upstream
Tssr51990	transcription start site region 51990	661 bp upstream
Tssr51991	transcription start site region 51991	543 bp upstream
Tssr51992	transcription start site region 51992	488 bp upstream
Tssr51993	transcription start site region 51993	316 bp upstream
Tssr51994	transcription start site region 51994	270 bp upstream
Tssr51995	transcription start site region 51995	54 bp upstream
Tssr51996	transcription start site region 51996	within coordinates
Tssr51997	transcription start site region 51997	27 bp downstream
Tssr51998	transcription start site region 51998	67 bp downstream
Tssr51999	transcription start site region 51999	102 bp downstream
Tssr52000	transcription start site region 52000	123 bp downstream
Tssr52001	transcription start site region 52001	143 bp downstream
Tssr52002	transcription start site region 52002	163 bp downstream
Tssr52003	transcription start site region 52003	205 bp downstream