rs46610381 SNP Detail

Summary

• ID
  rs46610381
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14067959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAGTTTT CCACAAATTT
  TTCTTTCACA TTTGAGTGAC TAGCACAGTA GGATTCTGAT GGTCTTATTT AAGCTAAAGA
  ATAGATAAAA AGAAAGACCA TTTTATCTGG ATACTTTGTT ATTTCTGGTA TCATCATTTT
  ATATATAAAT AAATGTAAGT GTCCTTCTTA GTTGTCATCC AAAGTTATTG TCTGTCTCTT
  R
  CCATGTGTGA ACTTGAAGCC TGTGTCATTC AGACTGTGAT AATTTTATCA CCAAACTACC
  TTTGAGAATT TATCCTCAGT GTCTGCTAGT GGGAACTTTG ACTACTAGCT GGAAAAGGCT
  TTTAAACTTA AGAGTAGATT CAGTGTATCA TTGGATCACT CATTGGTGAT GGGAAAAAAA
  TTACCATAGT AGATAATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60543071	NES16555062	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46610381					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60543071	NES16555062	PERLEGEN	MM_PANEL	f	SNP	A/G
ss145198076	ENSMUSSNP2067284	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14067959 () rs orientation: forward

Symbol	Name	Function Class
Afdn	afadin, adherens junction formation factor	within coordinates
Tssr142714	transcription start site region 142714	1604 bp downstream
Tssr142715	transcription start site region 142715	1578 bp downstream
Tssr142716	transcription start site region 142716	1537 bp downstream
Tssr142717	transcription start site region 142717	1514 bp downstream
Tssr142718	transcription start site region 142718	1501 bp downstream
Tssr142719	transcription start site region 142719	931 bp downstream