rs46610541 SNP Detail

Summary

• ID
  rs46610541
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30842135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCTGAGG CCCCTCAGCA
  TCCACCTGCG GCTCGACTCA CTGTGGTCTC CCAGCGGAAG ATGTTGCTGT AGAAACAGAT
  CCAGTTCTCA GAGAGGTAGA GGCGGCCCTG GAGGAGGATC TCCCTCTGCA GGGCGCAGGA
  GTAATCTGAG AGTGGCAGAG GGAGAGATGG GCAGACACGG TGAGTCACGT GATCTGTCCC
  S
  GCGCGGTAGC CCACAAACCA GCAGGGAGGC AGGAAAAGAA GCCAGAAGCT CCCGTCCAGG
  TCACTTAGGG AGGCTGGGGG CATGGACACT CACCCACGAT GAGGCGCTCT GCTTCAGGAA
  GTTTGCTGAA CAGTTTCCGG AAGTCCTCGT TGCGTTGTTT GTATGTGGGA CACAGCATCT
  GTGAAGAGGT TTGGGGCACG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148700747	ENSMUSSNP4522501	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss322139671	CHEV_7_31927729	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46610541					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30842135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18838	CpG island 18838	within coordinates
Gramd1a	GRAM domain containing 1A	within coordinates
Tssr71945	transcription start site region 71945	78 bp upstream