rs46611379 SNP Detail

Summary

• ID
  rs46611379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40481100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCATGTG CAGCTCTAAG
  GTTAGCCACG AGCTAACACA GCTGGTGGGT TCCAGGGCTG CACTGCGTTT CTCCCAAAGC
  ATCTGTGCAA AGTGGGAAAA GCCTGCTGAT GGGGAGGGGC CAGGCATCGG GAGAGCAGTG
  CCCCAGAGCT GGGAGGATCA CAAGGCTGAT GGGGATAACA GAAGCCTCTG GCAACCGGGA
  R
  CCCCAGATCA GAGGATTAGG CTTGCCATGA CCTGGCAAAC ACCAACTCAG CCCAGTGTAG
  CAGAGTGGCA TGAGAGCTCA AGACAGATGG CAGAATGCAT GGCAGCCCAG AGAGGTCCCC
  AAACACAGAT GCTGCAGTTT CTACCTCTCC CTGTGAGTGG AAAGACAGGG GCAGAACTAA
  TCACTGCAGT GTCCTAACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61273423	NES16894488	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46611379					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273423	NES16894488	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40481100 () rs orientation: forward

Symbol	Name	Function Class
Rr214672	regulatory region 214672	within coordinates
Rr222650	regulatory region 222650	within coordinates
Slc22a16	solute carrier family 22 (organic cation transporter), member 16	972 bp downstream