rs46611456 SNP Detail

Summary

• ID
  rs46611456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:13852698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGCTCT TCTTGGAGCC
  CACGCCTCTG CCAATGGGGT TTCCAGAGGA TCACCGAGGT TCCCCAGGGC CAGAGTAGAT
  CACAAAGATG TGGGAACAGA GCCCAGATCA GATGATGACA GTCCTGGGGA TGAGTCTTAC
  CCACGTCGGC CTGACAACCT CAAGGGACTG GCCTCATTCC AGCGAAGCCA AAGCACTGTC
  R
  CAAGCCTTGG GCTGGCGTTT CCCTCTCAGA ATGGATCTGC AGTTGCTAGC AGGTGGCCAA
  GTCTTGTTGA TAGGAATGCT GATGACTGGG AGAACTTTAC CTTTTCTCCT GCTTATGAGG
  CAAGCTACAA CCGAGCCACA AGCACCCACA GGTACTCATG TTTTCTTGTC TCAGAATCCC
  TGCACTAGAA ATGTCTTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61750099	NES17677551	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	A	G	G	G	G	G	G	G	A
ss148688901	ENSMUSSNP4454302	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46611456					SNP	A	A	G	G	G	G	G	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61750099	NES17677551	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:13852698 () rs orientation: forward

Symbol	Name	Function Class
Lyst	lysosomal trafficking regulator	within coordinates
Rr282634	regulatory region 282634	98 bp distal