rs46611609 SNP Detail

Summary

• ID
  rs46611609
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40578501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACTTTTT CAATTGCATT
  GTCTCCCCAG CCCAAAAACA GTATTCTTAA CAACCTTTCT GTGCCCACTC CCCAAAGAAG
  GCAGCACACA AAACACACAC TGCAGCCCAT GGCCTGGACC AGGAGAAGGA ATGTGTTAGG
  AGGAGGATGG TTTGTGCTGT GCTTTACGGC GCTTTCATTA TGATCCCAGG GAAAGATCTT
  W
  AAAAGAATAT TGTAATAAAA ATGCCTAAAT ATAAGAATAA AATCAGTGAC ACCAGTGAGA
  GACCTGCTAA GGATGGAGTT AGAAATCCAG TTTTTACTTT CAGCTGGTAT TTAATGATTG
  CACAGACCAC GGGACACAGT GTGAGATGAT GCATGCGTGT CCTCATCTGT TTCTTGTCGC
  TGAGACAGAG TACTGACGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60393131	NES15896640	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46611609					SNP	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393131	NES15896640	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40578501 () rs orientation: forward

Symbol	Name	Function Class
1700017G19Rik	RIKEN cDNA 1700017G19 gene	1440 bp upstream
Rr575827	regulatory region 575827	541 bp distal
Rr575828	regulatory region 575828	611 bp distal
Rr575829	regulatory region 575829	931 bp proximal
Rr575830	regulatory region 575830	1187 bp proximal
Tssr33066	transcription start site region 33066	1434 bp upstream