rs46612959 SNP Detail

Summary

• ID
  rs46612959
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134423513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA TTAAAGGTAT GAGCCGCGTA
  C
  GGTAGGGTTT TAAAATAAGT GTCTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145506458	ENSMUSSNP5002990	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss319982696	CHEV_1_136392352	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46612959					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134423513 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	661 bp distal
Rabif	RAB interacting factor	Intron
Rr396314	regulatory region 396314	1010 bp downstream
Rr418928	regulatory region 418928	1117 bp distal
Rr418929	regulatory region 418929	1024 bp distal
Rr418930	regulatory region 418930	583 bp distal
Tssr8899	transcription start site region 8899	1096 bp downstream
Tssr8900	transcription start site region 8900	1012 bp downstream
Tssr8901	transcription start site region 8901	759 bp downstream