rs46612963 SNP Detail

Summary

• ID
  rs46612963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165315952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGGGGGC CCAGCTTCTC
  CACATCCTCC GTGGACTGCT GAGCAGTGAT GGATCAGCCG GACTCTTCTG TTTCCCAGAG
  ATGCCTGGAA GGAACACACG GCCTTGGCCA TGCAAAGCAG AAGGCACAAG GCCTGACTCT
  GCTTTCCGCC CTGAGTGGGT CCTCCACCCT CCTTGGGATT GCGACATGTT TCCCCACTGG
  Y
  TACTGTCAAT GGGACCTTGT CCTGGCTCCT GGGGCCTGAG TGGTTTCTGT GGAGAAAGGG
  ACTTGTTGGA AAGTTTCTTG GTTTTTGTCG TTTGGAGGAG GGGGCAGGGG GGGGTTGGTT
  CAGAACATTG CATACACACA GCTTATAATC TATGGGCACT GCCATCTTAC CAGGTCCTGT
  AAAATATGAG AGCCTCATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148240397	ENSMUSSNP5316741	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46612963					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165315952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12708	CpG island 12708	353 bp distal
Rr569926	regulatory region 569926	1759 bp distal
Rr569927	regulatory region 569927	911 bp distal
Rr569928	regulatory region 569928	568 bp distal
Slc13a3	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	835 bp upstream
Tssr27627	transcription start site region 27627	830 bp upstream