rs46613011 SNP Detail

Summary

• ID
  rs46613011
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22533341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCCCTTTC CAAGTTTCTC CTCCACAAAC CCACTATCCC
  CCTGCCTCTA TGAGTGTGCT TCCCCACCTA CCCACCCACT TCTACCTCAG CGCCCTAGCA
  C
  TCCCCTACCC TGGGTCATTG AGCCTGCACA GGACCAAGGG GCTCCCCTCC AGTGATGACC
  AATAAGGCCA TTTCCTGCTA AGTGTGCAGC TGGAGCCAT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145304045	ENSMUSSNP2576424	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs46613011					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22533341 () rs orientation: forward

Symbol	Name	Function Class
Gm7072	predicted gene 7072	within coordinates
Gm53992	predicted gene, 53992	562 bp upstream
Rr392409	regulatory region 392409	1547 bp downstream
Rr523017	regulatory region 523017	within coordinates
Rr523018	regulatory region 523018	467 bp proximal
Tssr146602	transcription start site region 146602	434 bp downstream
Tssr146603	transcription start site region 146603	454 bp downstream