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rs46613027 SNP Detail
Summary
  • ID
    rs46613027
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr5:99091721 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGTATATTGT GGAAAGCCTT
    TAATCAATTT CCCATCACTT AAATAACCCC TAAAAGGAGA AGACAGAAAG GGAGGGGGTG
    TGATTTTCTT GTGTGTGTGT GTGTGTGTGT GTGTGTAAGA AGGTGAGTAG GAAAAGCCTC
    CTTTCTACGC TGACAAAGGA GAAGTCTGAA TGGACAGAGG GAGCCAATGA GACACAGAGT
    Y
    GTCTTGTTTG AGATCACTGA GTTCTGAGAC AGGAAGTACA AAGGAATGTG TCGGGAGTGG
    GCAGGAGTGG GCAGTAAATG GTAGAATGAG TAAGCTTCCA GGGACGCTGA GAGATTACCA
    CAGCATCCTG TGTATCCCGT GGGCTACAGT GAAGATCTGG GCATGGATCT GAGTCAGTGG
    TAGAACTTAC AGCAACTTGA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss61200724 NES16706810 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T T T T T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs46613027 SNP T T T T T T T T T T T T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss61200724 NES16706810 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:99091721 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Prkg2 protein kinase, cGMP-dependent, type II within coordinates
Tssr52014 transcription start site region 52014 89 bp upstream
Tssr52015 transcription start site region 52015 57 bp upstream
Tssr52016 transcription start site region 52016 22 bp upstream
Tssr52017 transcription start site region 52017 15 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory