rs46613519 SNP Detail

Summary

• ID
  rs46613519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84825523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGGCCA GCAGTCCTCT
  TGGGACTGCC CCATCCCAGA TCCTGTCCCA GGAAGGCAGC TCACCATCCT CAGGCTCTGT
  CCCTTCCCCA GACTGCAACA CATAGTGCAA CTTGGTGTAA TTGATGTAGC CAGGCTCAGG
  GGCAGTGGTC TCTGCAGCAG GAGGGCTGTC CCTGGGTACC ACTTCCCCAC TTGGGGCTTG
  Y
  GGCTCTAAAG ATGGGCGGCA GCGGCTGCTT GAGGGCCCCA AGCTAGAGGG CAGCCGAGTT
  TCCTCCAAGG GACTACCCTT GGCCTCTTTA GCCCTGCGGA AGATGTCAGC TACAAACTCC
  TTGGCCTTGG CAATGGCTGG TGAGGGCTCA GGGGCTCCAG AGGGCTGGGC TGGGACCACC
  TCAACACCAA GACTGGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60642558	NES16272412	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46613519					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60642558	NES16272412	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84825523 () rs orientation: forward

Symbol	Name	Function Class
Dcaf15	DDB1 and CUL4 associated factor 15	within coordinates
Gm39210	predicted gene, 39210	within coordinates
Rfx1	regulatory factor X, 1 (influences HLA class II expression)	1902 bp downstream