rs46614522 SNP Detail

Summary

• ID
  rs46614522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCGGCTTT ACATGGTGGT
  CGTCGCGCTA ACCTTCACGG CGCTCTTGCA GAGTTGATGG CTTTCGGCCA GCACCATAGC
  CACCTTGTGT CTCCCGCATC TCGGCCACTC ACAAATAAGG CCCAAGATAT CATCCCCACC
  ATACAACTAC ATACTCGTAG GCGGATCGCA GCCAAAGAGA CTTCTGAACG GTGCGCGCAC
  R
  CTTTTATAGC CCGGGTGACG CTCTCCCAAG AGCCTGCGCG CGAGGGGCGG GGCTTTCCCG
  CCCATTCCGA GCTCTCCCGC GCCTCGTCAC TTTGATTGGT GTACAGGCGG CCCGGATTCG
  ATGCGTGCGT CACAGGAATG GGCGGGCTGT GGAGGTGGGC GGGGAAAAGC CGAGCTGAAA
  CCACAGTTCT CGCGGTGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60445526	NES15941783	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46614522					SNP	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445526	NES15941783	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302007 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	within coordinates
Gm9369	predicted pseudogene 9369	1584 bp downstream
Prss12	serine protease 12 neurotrypsin (motopsin)	1761 bp downstream
Rr397991	regulatory region 397991	1324 bp downstream
Rr584523	regulatory region 584523	1439 bp distal
Rr584524	regulatory region 584524	1304 bp distal
Rr584525	regulatory region 584525	16 bp proximal
Rr584526	regulatory region 584526	561 bp proximal
Rr584527	regulatory region 584527	952 bp proximal
Snhg8	small nucleolar RNA host gene 8	22 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	292 bp upstream
Tssr31551	transcription start site region 31551	192 bp upstream
Tssr31552	transcription start site region 31552	230 bp upstream
Tssr35502	transcription start site region 35502	17 bp upstream
Tssr35503	transcription start site region 35503	557 bp downstream