rs46615080 SNP Detail

Summary

• ID
  rs46615080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43922692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATGTACT CGTTGAAGCT
  AACAGCCCTT CTATGAACCC TAGAGTGGAG TTACATGTTG AAGGTACTGA CAGCCTCTTG
  CTTGTCTCGA AGCAGCTCTG GAGGTTATGC ATTTTCGAAT GCAACCTGGG CCCTAGGAAT
  TCCATTATCA CTGTGATGAT TCTGTAATTT GTGGCTCTGT GGTGCCACCT AGCGGCCCTC
  R
  GCTGTTTAAC ATTCTTGACA GTTTTCTTGT GGTTTTTATA GGGCTTCAGA AAGACTTTGA
  TCAGTGGGAC CCTCTGGTGG AAGGAGATGA TGAGAACCTG ATTCCTGGGT CACCCTTTGA
  CGCAGTCACC CAGGTCCCGG CTCAGCAACA CTCTCCAGGA TCACAGACCC AGAATTAGAA
  GAACTTGCTT GTTACACAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62746817	NES17342869	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46615080					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62746817	NES17342869	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43922692 () rs orientation: forward

Symbol	Name	Function Class
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	within coordinates
Tssr144713	transcription start site region 144713	490 bp downstream
Tssr144714	transcription start site region 144714	405 bp downstream
Tssr144715	transcription start site region 144715	76 bp upstream
Tssr148139	transcription start site region 148139	226 bp downstream
Tssr148140	transcription start site region 148140	284 bp downstream
Tssr148141	transcription start site region 148141	332 bp downstream
Tssr148142	transcription start site region 148142	381 bp downstream