rs46615265 SNP Detail

Summary

• ID
  rs46615265
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:75565219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTTCTCTG GCTAGGTGCA AATCAATAGT CCTAATTGGC
  GACAGGTCTA CTAGTTGTGG GAAAGAACCT CTACTGGCTT TCCACTTGCG TAAAATCTTG
  W
  ATCTTTTAAG TTTCTAGCTA TCTATGTACT TTATCTATGA TAGGTTGGTC TATGTCTATC
  TGTCTACCTA CCTATCTACA GATAGATATT ATCACACAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148372378	ENSMUSSNP3987596	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss325251685	CHEV_16_75768576	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46615265					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:75565219 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8370	CpG island 8370	1322 bp distal
Hspa13	heat shock protein 70 family, member 13	644 bp upstream
Rr325470	regulatory region 325470	18 bp distal
Rr404916	regulatory region 404916	1016 bp downstream
Rr404917	regulatory region 404917	118 bp downstream
Tssr141799	transcription start site region 141799	1534 bp upstream
Tssr141800	transcription start site region 141800	1256 bp upstream