rs46615873 SNP Detail

Summary

• ID
  rs46615873
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:82923623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAATCATA GCTTACTGCA
  TGGTACAGCT CACCACCAGG GTTACTGAGT AAGAGTTGGC CAACTGAAGA AAGTTGTGGA
  CAGGAAAAGT TAAAGGCAAG AACACAGTAG ATCTTGTGTT TGATGGGGGG GGGGGGGTAC
  GAAGAGAAAG TTATCTTCAC TATGTTTTTC TGAAATCTAC AACTGCTCAT GGACCCTAGA
  R
  GACTATTCTC AGGACACCCT AGAACTTGAG CGACAACTCC AGGAATGAAG CTGAGTGATT
  CCCGAGGTCC GGAGCTCGCG GGTGAGGGGC CTTGTGCAGT GAGATGGCCT GATGCCTCAC
  ACCCTGGGGC CACAAGCGGC ACCAAAGTGA TGTCTGAACT TGAGGAGCCT GAGGGGAAGA
  AGGCCCAGGC GGCGGGAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60904333	NES15955964	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46615873					SNP	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904333	NES15955964	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:82923623 () rs orientation: forward

Symbol	Name	Function Class
M1ap	meiosis 1 associated protein	266 bp upstream
Rr632711	regulatory region 632711	682 bp distal
Tssr57261	transcription start site region 57261	256 bp upstream