rs46616106 SNP Detail

Summary

• ID
  rs46616106
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171283910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCT GGCTTTTTAA GACAGGGTTT
  Y
  CTTTTATAGT CCTGGCTGCC CTGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss119999029	PARCsnp_1.13592	PARC_SEQ	INBRED	f	SNP		T	C
ss120001129	PARCsnp_1.02833	PARC_SEQ	INBRED	f	SNP		T	C
ss146163727	ENSMUSSNP6789619	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs46616106					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171283910 () rs orientation: forward

Symbol	Name	Function Class
F11r	F11 receptor	within coordinates
Rr14113	regulatory region 14113	1110 bp distal
Rr25638	regulatory region 25638	1285 bp proximal
Tssr10057	transcription start site region 10057	1763 bp upstream
Tssr10058	transcription start site region 10058	1991 bp upstream