rs46616775 SNP Detail

Summary

• ID
  rs46616775
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77922301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGGTGGT TTGAGCAACC
  TCAGCAGGCT ATTTCCCTCC CCGACCCCCT TTTTCAATAG GGTGTAGCTC TGGCTGATCG
  GCTGACCTTG AACTCACAGA GGTCCAGCTG GCTCTGCCTC TTGAATGCTG GGATTAAAGG
  TGTGCTCCAT CATGCTCAGC TTAAATATTT TGTTGTTGTT TGTTTGTTTG TCCATTTGAA
  R
  GTATCAAAAG TCAATCTCAG CTATCAACTG AAGCTGAGTA TGGTAGCCTA TGCCTATAAA
  TCCCACGGTC AGAAGGCTGA GGCAGGAGGA TTGTCAAAAG CTCGAGACCA GACTGGACTG
  CTGTGCAAAG CCAAAAACAA AAAAAAACAA AAATGAAAAG ATGCTGATTT GGTGGAGCTC
  TGTCCGACAG CAGCTTTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136663653	ENSMUSSNP5532351	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46616775					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77922301 () rs orientation: forward

Symbol	Name	Function Class
Gm23609	predicted gene, 23609	921 bp upstream
Gm39375	predicted gene, 39375	within coordinates
Gm69108	predicted gene, 69108	1096 bp upstream
Rr683457	regulatory region 683457	962 bp distal