rs46616847 SNP Detail

Summary

• ID
  rs46616847
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153537067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCTATGT CTATGCTGAG
  TGTTCTGACC TTCAGACATC TGAAGGATTA GTAGCCTAAC ATTTCCTGAA AAAAAGTGAG
  CCTGAGACCA CCACCAGTCT GTCACCACAG GGCCTGGACA GGGAACTAGG TTGAGATGAC
  TACCAAGACA GTGCCAGGTA GGCCTGGACA GGCTCCCAGG ACAGGAAGCA AGCCAAAGGC
  K
  GGAAGAAGCC AACCTGGGAC AGCAGGCCCC AGGCAGGAGT GAGCCCAAGA CAAATGGCCG
  CACAGGTGGG CCGGTAGAGG AGCTGGCCTG AGATGAACAC TAATCTGTCG CCCTCCAGGC
  CTAGAGGGTG GGGACAGATC ATGCCCAAGA TGACTCCTGC CCTGTGCCAT ATTGCACAAG
  CAGGGCATAG CACTCCTGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136113969	ENSMUSSNP3832582	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46616847					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153537067 () rs orientation: forward

Symbol	Name	Function Class
Gm25757	predicted gene, 25757	138 bp downstream
Rr587767	regulatory region 587767	820 bp distal
Rr587768	regulatory region 587768	677 bp distal
Rr587769	regulatory region 587769	486 bp distal
Rr587770	regulatory region 587770	within coordinates
Rr587771	regulatory region 587771	205 bp distal
Rr587772	regulatory region 587772	380 bp proximal