rs46617046 SNP Detail

Summary

• ID
  rs46617046
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:52651239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATACCTA ACCAAACCAA
  TAATCTCAAG GAGACAAGAC TCTCAAGATG CTTTCTGGGG TATTGAATTG GTTATGAAAA
  TTAATGTGAG GTGATCAGTC TTAAATGTGT GTAGAAGCCA GGCTGTGTAT GTGAGTAAAT
  GGCTCACCAG CATGTAGGGA TTTACAGTTC TCTTCTTTGG ACTCTAGATA CACTGGGAAA
  M
  GTTGCTTCAA GCATCTAATA CTTTTACTTG CAAAGATGGA GACTGTGTGT TGAAGGATAA
  GTGAAAATAC ATCTATATCC CTTAAAATGA TTTTGTCAGT TTTTTTTTTT ATCATAGCAA
  CAGAAAAATA ACTAAAACAA TCACCTATAT ATTTTGTCTG TTCCTGCAAT TTAGCATTAA
  ATACTTATTG AAAGTATCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144869205	ENSMUSSNP959886	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46617046					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:52651239 () rs orientation: forward

Symbol	Name	Function Class
Gm9892	predicted gene 9892	1148 bp upstream
Gm64848	predicted gene, 64848	within coordinates
Rr663484	regulatory region 663484	987 bp distal
Tssr81291	transcription start site region 81291	1306 bp upstream
Tssr81292	transcription start site region 81292	1133 bp upstream
Tssr81293	transcription start site region 81293	1060 bp upstream
Tssr81294	transcription start site region 81294	1013 bp upstream