rs46617263 SNP Detail

Summary

• ID
  rs46617263
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156957637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCCCCCC CTTTTTTTCT
  TTTGTAACCC AGTCTCACCT TGAATTCATT TTATAGGTGA GGAAGACCCT ACCTTCACCT
  CTCTCCCTCC TCTCGGGACA GACTGCAACA GCCATGTGCC AGCATAGCTG GGTTATAAAA
  CAGCTGGGTT TTAAAACAGC TGCACAGCTA CTCTCAAGAC AAGACATTCA AAGCATGTTT
  K
  AAACTAAATT TTTGTTTTAG AAATGAGATA ATTGTTCCTC AATCTAGCTC CTGTGTGTTT
  GTGTGTGTGT GCACATACAA GATGCACCAG AGGTCAATTG AGTGTCTTCT GCCTCTCACA
  GTGTTGGGGT TACAAGCCTG TGTCCAGCAA TGCTTTTTTT TTTTTTAAAT TGTTGTGGTT
  GTGTTATTTT GTTTACTTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148092227	ENSMUSSNP3938889	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46617263					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156957637 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	757 bp distal
Rr568436	regulatory region 568436	1237 bp proximal
Rr568437	regulatory region 568437	1410 bp proximal
Rr568438	regulatory region 568438	1811 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27143	transcription start site region 27143	1391 bp upstream